Vol. 3, No. 6 — June 2026Independent since 2024

TheCompound Journal

Reporting on incretins, compounding & the peptide supply chain

A monthly journal of record.
30 issues · 32 contributors
Not medical advice. We sell nothing.

Paperwork

The certificate says 2026. The vial in your hand does not say anything.

What happens to traceability when bulk material is subdivided, repackaged and relabelled two or three times before sale.

A certificate of analysis makes claims about a batch. The batch number is therefore not an administrative detail but the entire mechanism by which the document attaches to physical material. If the number printed on the certificate does not appear on the vial — not on the box, not on the invoice, not in the listing, on the vial — then the document is a true statement about a quantity of material that may or may not be the quantity in front of you. This is the first thing the Journal checks and the check most often fails, usually for reasons that are administrative rather than sinister.

The header block: identifying the object

The top of a certificate answers the question, what is this document about. A complete header names the product, gives a catalogue or item number, gives the batch or lot number, states the quantity or fill weight, names the manufacturer and the site, and identifies the customer or order where applicable. Some add a chemical name, a sequence in single-letter code, a molecular formula and a molecular weight, all of which are useful because they let a reader check the theoretical values used elsewhere on the page.

The sequence in particular is worth insisting on. A certificate that prints the one-letter sequence has given a reader the means to calculate the expected mass independently, and therefore to check the identity line. Two of the twenty companies in the Journal’s dossier programme do this as standard. It costs nothing and it converts one line of the document from an assertion into a verifiable claim.

What a header should never do is identify the product only by a trade name. A vial described as a proprietary blend with no chemical identity, no formula and no sequence cannot be checked against anything, and a certificate for such a product is a document about a name. This is a documentary observation rather than an accusation, and the remedy is trivial: print the sequence.

What a batch number is supposed to mean

A batch, or lot, is a defined quantity of material produced in a single process run or a defined series of runs, homogeneous within itself, and identified by a unique code. That definition does real work: it is what makes it meaningful to test a sample and draw conclusions about the whole. If the material identified by one code is not homogeneous — if it was blended from separate syntheses, or filled across several sessions from stock stored differently — then a result on one sample generalises less well than the certificate implies.

In this trade batch codes range from the highly informative to the arbitrary. A code encoding the year, the month, the product and a sequence number tells a reader something and can be checked for internal consistency across documents. A four-digit code with no discernible structure cannot. Neither format is wrong; the difference is whether a reader can detect an anomaly.

The Journal’s dossier programme asks each company how batch codes are constructed and whether one code corresponds to one synthesis, one fill, or one shipment. The answers vary considerably and several companies have not previously been asked. We publish the answers without comment, because a code that identifies a fill session rather than a synthesis is a perfectly reasonable convention as long as a reader knows which convention is in use.

A purity limit of ≥95% on material that always reports 99% is not a control. It is a formality with a number attached.

On decorative acceptance criteria

Check the vial, not the box

The single most common documentary failure the Journal encounters is a batch number on the certificate that does not appear on the vial. The variants are instructive. Sometimes the number is on the outer carton and not the vial, which means the connection between document and material depends on the carton having been packed correctly. Sometimes the vial carries a different number entirely, and the certificate corresponds to an earlier lot. Sometimes the vial carries no number at all, in which case the certificate cannot be attached to it by any means.

These situations are not equivalent and none of them is, on its own, evidence of misconduct. Subdivision and repackaging generate new identifiers legitimately, and a reseller filling vials from bulk may reasonably supply the synthesis house’s certificate for the bulk material while assigning its own fill lot. What is not reasonable is leaving the reader to guess which object the document describes, because that guess is exactly what a certificate exists to remove.

The remedy is a single line: a statement of the relationship between the certificate’s lot and the vial’s lot. “Filled from bulk lot X as fill lot Y on date Z” is eleven words and resolves the entire question. Three of the twenty companies in our programme now print something to this effect, two of them after we asked.

The absent tests, and what filling each would involve
TestOn how many of 20 certificatesRelative cost vs a purity runTurnaround
Purity by RP-HPLC202–5 days
Identity by intact mass140.5–1×2–5 days
Water by Karl Fischer41–1.5×3–5 days
Peptide content by nitrogen32.5–3×1–2 weeks
Counter-ion by ion chromatography21.5–2×1–2 weeks
Residual solvent by headspace GC21.5–2×1–2 weeks
Peptide mapping / MS-MS sequence16–10×3–5 weeks
Bacterial endotoxin (LAL)02–3×3–7 days
Sterility03–5×14 days minimum
Container closure integrity02–4×1–3 weeks
Cost multiples are indicative, drawn from quotations obtained by the Journal from four contract laboratories for single-sample private submissions, and vary substantially with volume. Sterility testing cannot be shortened below the incubation period. Nothing in this table implies that a research-chemical supplier is obliged to perform any of it.

Three dates, and the conventions behind them

Date of manufacture is when the material was made. Date of analysis is when the reported tests were performed. Retest date is the date by which the material should be re-examined if it is to continue to be used, and expiry date is the date after which it should not be used at all. The last two rest on different evidence: an expiry date implies stability data supporting the claim over that period, while a retest date implies a policy of re-examination in the absence of such data.

In this market the two are used interchangeably, and the substitution matters. A vial marked with a two-year expiry, where no stability study exists, is carrying a claim its documentation cannot support. The same vial marked with a two-year retest date is carrying a much weaker and entirely defensible statement: we have not established shelf life, so look again by this date. The second is honest and the first is not, and the difference is one word.

What follows for a reader is a specific question to ask: on what basis. A supplier that can point to real-time or accelerated stability data for the sequence in question has something. A supplier that assigned twenty-four months because that is what the form said has something else, and the international framework for setting such limits is explicit about the evidence required.1

The certificate is a snapshot, and the vial has aged

Every claim on a certificate is indexed to the date of analysis, and everything that has happened to the material since is outside the document. For lyophilised peptides stored cold, dry and dark, the rate of change is slow but not zero: deamidation proceeds even in the solid state at a rate that depends on residual water, oxidation proceeds in the presence of air and light, and aggregation can occur after a temperature excursion that leaves no other trace.2

The practical significance depends on the interval. A certificate dated three weeks before shipment describes material that is, for most purposes, the material in the vial. A certificate dated fourteen months before shipment describes an earlier object. The Journal’s audit of certificates supplied through the dossier programme found a median interval between manufacture and analysis of eleven days, which is reassuring, and a median interval between analysis and the customer receiving the vial of somewhat over four months, which is the number nobody reports.

None of this argues for retesting every vial. It argues for reading the date, which takes two seconds, and for treating purity figures as historical rather than current. It also argues for taking the appearance line seriously, since a change in the cake is one of the few observations a buyer can make that bears on what has happened since the document was written.

2217115.6020Batch no.20Purity18Analysis date14Identity13Appearance11Signed name10Mfg date9Spec column7Named method6Sequence4Water3Contentcertificates of 20
Figure. Of twenty suppliers’ certificates, the number carrying each element. Every document reports a purity figure; seven name the method that produced it.

How this publication handles certificates

Four rules, arrived at over two years and revised twice. First, we do not cite a purity figure without the method behind it; where a supplier will not supply the method, we report the figure as unverifiable and say who declined. Second, we ask for the underlying laboratory report rather than the certificate, and we record who supplies one. Third, we check the accreditation scope of any laboratory named on a document we intend to rely on. Fourth, we put every documentary finding to the company concerned before publication and print the response in full.

The fourth rule is the one that has changed our coverage most. A substantial majority of the anomalies we find turn out to have mundane explanations: a transcription error, a document forwarded for the wrong lot, a template field left unedited, a scanned copy that lost its metadata. Publishing the finding without the explanation would have produced a series of insinuations rather than a series of corrections, and the corrections are more useful.

The rules also mean we publish less than we could. There are documents in this office that we consider unreliable and have not written about, because the company concerned did not respond and the finding alone would not support a published inference. That is a deliberate trade, and readers who suspect us of excessive caution are welcome to say so at letters@compoundjournal.com, where several already have.

A necessary distinction between a bad document and a bad product

Almost nothing in this article supports an inference about the contents of a vial. A certificate missing a specification column, an unsigned footer, a stale date of analysis and a batch number that appears only on the carton is a poor document. The material it accompanies may be excellent, and in the Journal’s experience frequently is: the analytical work behind these products is often better than the paperwork that reports it, because the paperwork is produced by a commercial function and the analysis by a laboratory.

The reverse also holds. A beautifully constructed certificate with four columns, two signatures and a named method is evidence of a functioning documentary process and is not evidence about the vial either, since a document cannot testify to material it does not accompany. This is why the Journal reports documents as documents and material as material, and declines to convert one into a claim about the other.

We labour the point because the alternative is a genre of coverage that treats documentary weakness as proof of dishonesty, and that genre is both unfair and useless. Unfair because most documentary weakness in this trade is inherited convention rather than intent. Useless because it gives a reader nothing to do. Reading the document properly gives a reader something to do, which is the entire purpose of this piece.

What remains genuinely absent from this market is any documentation of what happens to a vial between the date of analysis and the day it is opened. Every certificate is a snapshot at manufacture; nothing records the four months in transit and storage that follow. Until somebody prices a cheap release-and-receipt check, the honest statement about any research vial is that its purity was measured once, some time ago, by a method that may not be stated.

References

  1. International Council for Harmonisation. Q6B: Specifications — Test Procedures and Acceptance Criteria for Biotechnological/Biological Products. 1999.
  2. “Solid-state stability of lyophilised synthetic peptides: residual water, deamidation and oxidation on storage.” Journal of Peptide Science. 2021;27(4):e3298.

Letters to the Editor

5 printed

Selected from correspondence received on this article. Writers are identified by initial, surname and city, verified before printing. Replies are from the desk that filed the piece or from the standards editor. Write to letters@compoundjournal.com.

The most useful sentence in the piece is the one saying a bad document is not a bad product. I have spent two years on forums watching people conclude the opposite from a missing signature block, and it has made the whole conversation about honesty rather than about paperwork.

H. Ravensworth, York

The Journal replies

That inversion is the reason we wrote the final section, and we would rather be accused of excessive caution than contribute to it.

I supply research peptides and I want to push back on the specification column point. We sell from a catalogue of six hundred products. Writing a meaningful individual specification for each would take a year of somebody’s time, and a generic one would be exactly the decorative limit your article criticises. What would you actually have us do?

E. Marchetti, Bologna

The Journal replies

A fair challenge. Our answer is that a generic limit stated honestly is better than no limit at all, provided the typical result is also published so a reader can see the margin. What we object to is a decorative limit presented as a control. Publishing your process capability alongside it removes the objection entirely, and costs you a spreadsheet.

Your ten-minute check told me in about ninety seconds that the batch number on my certificate appears nowhere on the vial. I wrote to the supplier and had a straightforward answer within a day: the certificate covers the bulk lot and the vial carries a fill code. I would never have known to ask.

L. Dziedzic, Wrocław

The Journal replies

That is exactly the intended use, and the supplier’s answer is the correct one. The remaining question is why the relationship between the two codes is not printed on the document, since it takes a line.

You describe reused chromatogram images as a tell. I work in a contract laboratory and I would note that some data systems export a representative overlay rather than the individual injection, so identical-looking traces can occur legitimately across a batch series. It is still worth asking about; it is not the smoking gun your article implies.

E. Beauchamp, Ottawa, ON

The Journal replies

A useful qualification and the text has been softened. The observation remains worth making; the inference we drew from it was stronger than the practice supports.

On the accreditation-scope point: most private buyers will not know which accreditation body to search. It would be more useful to publish the four or five registers that cover the laboratories this market actually uses than to tell readers the registers exist.

B. Wojciechowski, Kraków

The Journal replies

Agreed, and the standards desk is compiling exactly that. It will appear as a standing reference page rather than inside an article, so that it can be kept current.

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