Every letter we have printed
Page 81 of 93 of this archive, newest first.
On “The fourteen-day problem, and what it does to a commercial testing model” — The Supply Chain, 9 May 2024
The testing market for this subject is thin because the demand is thin, and the demand is thin because the certificate does not have a field for it. Formats create markets. Add a sterility line to the standard template and somebody will start selling the test within a year.
— F. Legrand, Rennes
That is an elegant statement of something we have argued more clumsily. The document shapes the trade rather than merely recording it.
On “The fourteen-day problem, and what it does to a commercial testing model” — The Supply Chain, 9 May 2024
Research-grade material is not sold as sterile, is not claimed to be sterile and is not approved for human use in any jurisdiction. That is a straightforward statement of what the grade is, and your department is one of the few places in this trade where it is made without embarrassment.
— S. Hedegaard, Esbjerg
On “Tapering: a word borrowed from drugs with withdrawal syndromes” — Clinical Trials, 9 May 2024
Tapering is borrowed language from drug classes with withdrawal syndromes, and there is no equivalent phenomenon here. Whether a gradual reduction changes the trajectory is an open question rather than an established practice, and the borrowed word implies an answer.
— R. Devaney, Ballarat, VIC
The vocabulary carries an assumption and the assumption has not been tested. We now say gradual reduction rather than taper for that reason.
On “Tapering: a word borrowed from drugs with withdrawal syndromes” — Clinical Trials, 9 May 2024
Tapering is described in the community literature with a confidence the published evidence does not support. There is no trial that compares a taper against an abrupt stop in this class, and the absence should be stated wherever the practice is discussed.
— A. Wiśniewski, Szczecin
It should, and we try to. A practice can be widespread, plausible and entirely unstudied at the same time, and readers are owed all three facts together.
On “What a mass spectrometer does to a peptide before it measures anything” — Explainers, 8 May 2024
Ion suppression is the point I would put in bold. A species that ionises poorly in the presence of an excess of something that ionises well can be present at several per cent and invisible in the spectrum. Absence of a peak is not absence of a compound, and the report cannot tell you which you have.
— L. Wickramasinghe, Kandy
The distinction between an absent signal and an absent species is the one this whole section turns on, and you have stated it more compactly than the piece did.
On “What a mass spectrometer does to a peptide before it measures anything” — Explainers, 8 May 2024
Charge-state distribution is diagnostic and almost always discarded. A peptide that normally presents as a triply and quadruply charged pair, appearing this time as a broad ladder, is telling you something about its conformation or its buffer. The information is in the file and never in the summary.
— D. Iversen, Aalborg
On “What a mass spectrometer does to a peptide before it measures anything” — Explainers, 8 May 2024
One request for the standing checklist. Ask whether the spectrum was acquired on the same sample preparation as the chromatography or on a separate weighing. If separate, the two sections of the certificate describe two different aliquots, and a reader is entitled to know that before drawing the two together.
— R. Ekwueme, Awka
On “Target dose, effective dose, and the distance between them” — Pharmacology, 8 May 2024
The plateau discussion in community settings has a strong survivorship character. People whose trajectory continued do not post about a plateau, so the visible discussion overstates how universal the experience is.
— R. Duffy-Behan, Athlone
On “Target dose, effective dose, and the distance between them” — Pharmacology, 8 May 2024
Weight trajectories in the published trials flatten well before the study ends, and the curve shape is one of the most useful things a reader can be shown. Expectations set on the early gradient are set on a section of a curve that does not continue.
— M. Ferrari, Trieste
On “Target dose, effective dose, and the distance between them” — Pharmacology, 8 May 2024
Thank you for saying plainly that the maximum dose is not the goal. I stopped at 10 mg fourteen months ago because it was working and I was tired of arguing about it. Every article I read before yours implied I had given up early.
— Z. Karadzic, Novi Sad
On “Two analysts, one chromatogram, two answers” — Laboratory Notebook, 6 May 2024
I would like to see the phrase "area normalisation" appear on certificates that use it. It is not a defect; it is a method with a stated assumption, which is that everything present absorbs equally at the detection wavelength. The assumption is false for peptides and the arithmetic proceeds regardless.
— R. Steensen, Vejle
Named assumptions are the whole argument of this department. A method that states what it is assuming can be argued with, and a method that leaves the assumption implicit cannot.
On “Two analysts, one chromatogram, two answers” — Laboratory Notebook, 6 May 2024
The threshold discussion needs one more sentence. A reporting threshold and an integration threshold are different settings, and software will let you set them independently. A method can integrate down to 0.01 per cent and report nothing below 0.10 per cent, and the resulting certificate is honest, complete and impossible to compare with anything.
— M. Karlsen, Kristiansand
That distinction is now in the sidebar, and it is a better version of the point than the one we printed. Two thresholds, two decisions, one number at the end of them.
On “Where the solvent front ends is a decision, not a fact” — Analytics, 5 May 2024
Your worked example uses valley-to-valley integration throughout. Tangential skim on a shoulder eluting off the main peak will hand a slice of the impurity back to the product and move the figure in the flattering direction. It is a legitimate choice with a published rationale, and it is invisible on the certificate.
— D. Sakamoto, Kobe
On “Where the solvent front ends is a decision, not a fact” — Analytics, 5 May 2024
The article assumes the baseline is a decision made once. On a shallow gradient with an absorbing mobile-phase additive it drifts through the run, and where the software anchors that drift moves small late peaks in and out of existence. Two analysts, same file, different answer, neither of them wrong.
— Z. Karadzic, Novi Sad
On “Where the solvent front ends is a decision, not a fact” — Analytics, 5 May 2024
I run a small teaching laboratory and I use this department as reading for second-year students. The point that lands hardest with them is that four defensible analytical choices can move a reported figure by nearly two points without anyone behaving badly. They arrive believing measurement is a fact and leave understanding it is a procedure.
— N. Villaseñor, Guadalajara
On “Where the solvent front ends is a decision, not a fact” — Analytics, 5 May 2024
Your submission design has a hole in it. Eight vials from one lot cannot separate variation between laboratories from variation between vials, because you have no replicate within a laboratory to estimate the second. Two vials each is a start and it is not enough, and the honest conclusion from your table is that the four figures differ, not that the laboratories do.
— M. Bogdanović, Podgorica
Correct, and the criticism is well aimed. With pairs we can see within-laboratory agreement, which was good in every case, but we cannot decompose the remaining variance properly. The four-condition study on a single sample was designed to isolate the method effect for exactly that reason, and it is the stronger half of the exercise. We should have said which half carried the weight.
On “The shortage years, and what they taught about interruption” — The Ledger, 3 May 2024
Loss of confidence in the material is a reason your taxonomy does not include and I have seen repeatedly. A batch that behaved differently from the previous one ends more arrangements than any pharmacological consideration, and it is a supply-quality question rather than a clinical one.
— P. Hollingsworth, Norwich
That is a reason specific to this market and it belongs in the taxonomy. We have added it, and it connects the discontinuation coverage to the analytical coverage in a way neither had before.
On “The shortage years, and what they taught about interruption” — The Ledger, 3 May 2024
Nobody separates the reason for the first stop from the reason for the last one. People who stop and restart several times have a pattern, and a pattern is more informative than any single event within it.
— S. Hedegaard, Esbjerg
Sequences rather than events is the analysis this literature has never attempted, and the data to do it exists in several cohorts.
On “The shortage years, and what they taught about interruption” — The Ledger, 3 May 2024
Nobody discusses what maintenance does to the appetite for other interventions. Several accounts I have read describe a period in which nothing else was attempted because the current arrangement was working, and the cost of that pause only becomes visible later.
— L. Wickramasinghe, Kandy
On “The incidence tables, read line by line” — Pharmacology, 3 May 2024
Duration of follow-up drives incidence mechanically: a longer study finds more of everything. Comparing rates between studies of different lengths without annualising is a category error and it is done constantly.
— L. Silveira, Belo Horizonte
On “The incidence tables, read line by line” — Pharmacology, 3 May 2024
Trial populations were selected, monitored and supported in ways that the general population is not, and event reporting in a trial is systematic in a way that reporting outside one never is. Both facts push the comparison in opposite directions and neither is usually mentioned.
— C. Wilcoxson, Des Moines, IA
On “The incidence tables, read line by line” — Pharmacology, 3 May 2024
The vagal afferent pathway is the part of the story with the strongest experimental support and the weakest presence in general discussion, presumably because it is harder to draw. Mechanistic coverage tends to follow what can be diagrammed.
— M. Halim, Kuala Lumpur
On “What the trials counted as intolerance” — Patient Notes, 1 May 2024
The relationship between escalation rate and reported effects is one of the better-supported findings in the area and it is stated as folklore rather than as evidence in most discussion. The underlying data is real and it is worth citing properly.
— M. Ipsen, Randers
On “What the trials counted as intolerance” — Patient Notes, 1 May 2024
The interesting number is not how many people experienced an effect but how many changed what they were doing because of it. The second is collected in most trials and reported in few.
— V. Petrosyan, Yerevan
Behaviour change is the endpoint that matters to a reader and the one most often left in the tables. We try to quote discontinuation-for-cause rather than incidence where both exist.
On “What the trials counted as intolerance” — Patient Notes, 1 May 2024
A small point of precision. You use "gastroparesis" in the tag list and then spend a paragraph saying it is not a synonym for drug-induced emptying delay. That is a slightly awkward position to hold.
— T. Ogunsanya, Abuja
It is, and it is a compromise with how readers search. The tag exists because that is the word people use; the glossary exists because it is the wrong one. We would rather be findable and then precise than precise and unread.
On “What the trials counted as intolerance” — Patient Notes, 1 May 2024
Reporting on management would be improved by a single distinction: approaches with randomised evidence, approaches with observational evidence, and approaches with none. Most articles mix all three in one list.
— A. Salcedo, Bilbao
Three tiers, clearly separated, is a format we intend to adopt for this material. It is a presentational fix for a problem that is otherwise very hard to write around.
On “What the trials counted as intolerance” — Patient Notes, 1 May 2024
I teach a seminar that uses two of your pieces as set reading. Students arrive expecting advocacy and are visibly unsettled by the refusal to supply any.
— R. Hollenbeck, Spokane, WA
On “The intramuscular injection nobody intended” — Patient Notes, 1 May 2024
A practical point about drawing up. A needle wide enough to withdraw viscous solution quickly is not the needle anybody wants for the injection itself, and swapping between them is normal practice rather than fussiness. The dead volume in the hub is also a real loss on small quantities.
— T. Blakemore, Hull
Hub dead volume is worth a line of its own, particularly where a nominal volume of a few hundredths of a millilitre is being drawn.
On “The intramuscular injection nobody intended” — Patient Notes, 1 May 2024
Gauge and length are chosen in this market largely by anecdote, while the published work on the subject in adjacent clinical contexts is extensive and specific. The evidence exists and is not being read.
— N. Villaseñor, Guadalajara
The clinical literature on needle selection is unusually good and unusually ignored here, presumably because it lives in journals nobody in this market subscribes to.
On “The intramuscular injection nobody intended” — Patient Notes, 1 May 2024
I gave myself a tenth of my intended dose for five weeks. I had been using insulin syringes, ran out, and used the 1 mL syringes that came with the vials, which are marked in millilitres. I did not notice because the plunger was in roughly the same place. Nobody warned me these were different scales.
— R. Perreault, Trois-Rivières, QC
This is the error we rank first for magnitude and we are grateful for the account, because it happened exactly as the mechanism predicts: a substitution that produced no visible signal. The one structural defence is to buy syringes deliberately and keep to a single type rather than using whatever arrives in the parcel.
On “Why the customs shed is the least documented step in this trade” — Laboratory Notebook, 28 Apr 2024
The comparison your readers want is between an excursion and the stability data that would justify tolerating it. Without accelerated stability figures for the specific formulation, an excursion assessment is judgement dressed as calculation. Very few suppliers in this trade hold those figures.
— E. Vandenberghe, Ghent
On “Why the customs shed is the least documented step in this trade” — Laboratory Notebook, 28 Apr 2024
A logger recording every five minutes and a logger recording hourly will produce different excursion findings on the same journey, because the short spike at the depot falls between readings. Sampling interval is a specification and it is almost never quoted with the logger data.
— H. Barreto, Recife
On “The isotope pattern tells you the charge, and the charge tells you the mass” — Explainers, 28 Apr 2024
Monoisotopic and average mass differ by enough at peptide scale to matter, and the two are quoted interchangeably in supplier literature. For a forty-residue sequence the gap is a couple of daltons, which is exactly the size of the modification a buyer might be trying to exclude.
— N. Aftab, Lahore
On “The isotope pattern tells you the charge, and the charge tells you the mass” — Explainers, 28 Apr 2024
A small point on units. Parts per million mass accuracy is a proportion, so five parts per million on a small peptide is a few thousandths of a dalton and on a large one is rather more. Quoting an accuracy specification without the mass it applies to is the same error your chromatography pieces complain about.
— E. Halloran, Ennis
On “Why people actually stop, in the order they actually stop” — Patient Notes, 26 Apr 2024
Timing matters as much as reason. Stopping in week three and stopping in year three are different events with different consequences, and reporting a single discontinuation rate for a study collapses that entirely.
— C. Adeoti, Ibadan
On “Why people actually stop, in the order they actually stop” — Patient Notes, 26 Apr 2024
Supply interruption is a reason people stop that has nothing to do with anybody’s decision, and it produces the same physiological sequence as a planned stop with none of the preparation. The supply reporting elsewhere in the issue is directly relevant here.
— H. Adeyinka, Lokoja
The two departments have been converging on this for a year, and an unplanned stop caused by availability is now covered as a clinical event rather than only a logistical one.
On “Why people actually stop, in the order they actually stop” — Patient Notes, 26 Apr 2024
Reporting the median rather than the mean would change the appearance of most of these results, because the distributions are skewed. Where both are available the gap between them is itself informative and it is almost never printed.
— H. Okwuosa, Enugu
Skew is the norm in these outcomes and the mean is the convention, which is an unfortunate combination. Where we have both figures we print both.
On “Blind duplicates: what happens when a laboratory does not know it is being…” — The Supply Chain, 25 Apr 2024
A properly blind purchase means buying as an ordinary customer, from the ordinary catalogue, with no indication that the vial is going anywhere but a domestic address. Anything less and the supplier has had an opportunity, however small, to treat that order differently.
— E. Beauchamp, Ottawa, ON
On “Blind duplicates: what happens when a laboratory does not know it is being…” — The Supply Chain, 25 Apr 2024
Sample size defeats most of what is published. A single blind purchase from one supplier tells you about one vial. It is worth having and it is not a characterisation of anything, and the gap between those two statements is where most confusion in this market lives.
— L. Oyarzún, Concepción
One vial, one determination, one date. Everything beyond that is inference, and the inference is usually the part being sold.
On “Blind duplicates: what happens when a laboratory does not know it is being…” — The Supply Chain, 25 Apr 2024
The submitter-pays problem is real and I think you overstate it slightly. A laboratory that shades results towards its customers loses the only asset it has the moment a second laboratory disagrees in public. The incentive to please the payer is immediate; the incentive to be right is larger and slower.
— N. Bujanović, Sarajevo
That is the strongest version of the counter-argument and we should have printed it. The discipline is real, it is reputational rather than structural, and it depends on somebody occasionally running the second test.